Abstract This study investigates the effects of vegetation patch patterns on the morphological evolution of alluvial river channels at the reach‐scale. For this, a new two‐dimensional numerical biomorphodynamic model has been developed using the Telemac‐Mascaret system. Considering the newest development in the topic, the effects of vegetation on bedload transport are included by extending Einstein's parameters for the sediment transport formula. The model was subsequently validated by published laboratory experiments reproducing alternate bar dynamics with different vegetation establishment scenarios. The validated model was then used to study the influence of vegetation patch patterns on the channel morphological evolution considering the two most observed ones: (a) the filled pattern with plants well distributed within the patch, and (b) the stripe pattern with plants established only along the patch edges. 14 scenarios were simulated in total, including sensitivity analyses on the coefficients of vegetation characteristics. The results indicate that the morphological responses of an alternate bar system to the stripe pattern consist of channel widening, steeper slope and reduced water depth, with increased sediment transport rates. The effects of the filled pattern are similar but weaker. The results also show that with the stripe pattern, the alternate bars tend to migrate toward the centerline forming center bars. Besides, the scroll bars forming downstream are shorter, corresponding to less visible chute channels, compared to the filled pattern. Despite much less vegetation coverage, the stripe pattern decreases the bar elongation rates in a way similar to the filled pattern.